getSeq-FaFile_Circ-method: Yields the sequence for a particular range on a circular...
In ohlerlab/RiboseQC: RiboseQC, a Comprehensive Ribo-Seq Analysis Tool
getSeq,FaFile_Circ-method R Documentation
Yields the sequence for a particular range on a circular Fasta File
note that
Description
Yields the sequence for a particular range on a circular Fasta File
note that
Usage
## S4 method for signature 'FaFile_Circ'
getSeq(x, ...)
Arguments
x
FaFile_Circ; the object to get the seqinfo for
Value
A Seqinfo object
See Also
create_html_report
Examples
mytempfile=tempfile()
writeXStringSet(setNames(DNAStringSet(c('AAAAAAAAGG','AAAAAAAAGG')),
c('chrM','chr2')),filepath=mytempfile)
Rsamtools::indexFa(mytempfile)
cREF<-FaFile_Circ(Rsamtools::FaFile(mytempfile),circularRanges='chrM')
seqinfo(cREF)
ohlerlab/RiboseQC documentation built on Aug. 15, 2023, 7:30 a.m.
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| getSeq,FaFile_Circ-method | R Documentation |
Yields the sequence for a particular range on a circular Fasta File note that
Description
Yields the sequence for a particular range on a circular Fasta File note that
Usage
## S4 method for signature 'FaFile_Circ'
getSeq(x, ...)
Arguments
x |
FaFile_Circ; the object to get the seqinfo for |
Value
A Seqinfo object
See Also
create_html_report
Examples
mytempfile=tempfile()
writeXStringSet(setNames(DNAStringSet(c('AAAAAAAAGG','AAAAAAAAGG')),
c('chrM','chr2')),filepath=mytempfile)
Rsamtools::indexFa(mytempfile)
cREF<-FaFile_Circ(Rsamtools::FaFile(mytempfile),circularRanges='chrM')
seqinfo(cREF)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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