FaFile_Circ-class: A simple extension to the FaFile class that allows one to...
In ohlerlab/RiboseQC: RiboseQC, a Comprehensive Ribo-Seq Analysis Tool
FaFile_Circ-class R Documentation
A simple extension to the FaFile class that
allows one to include a list of circular
ranges, e.g. chrM
Description
A simple extension to the FaFile class that
allows one to include a list of circular
ranges, e.g. chrM
Fields
circularRangesA character vector describing which seqnames have circular ranges
Examples
mytempfile=tempfile()
writeXStringSet(setNames(DNAStringSet(c('AAAAAAAAGG','AAAAAAAAGG')),
c('chrM','chr2')),filepath=mytempfile)
Rsamtools::indexFa(mytempfile)
cREF<-FaFile_Circ(Rsamtools::FaFile(mytempfile),circularRanges='chrM')
cREF
ohlerlab/RiboseQC documentation built on Aug. 15, 2023, 7:30 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| FaFile_Circ-class | R Documentation |
A simple extension to the FaFile class that allows one to include a list of circular ranges, e.g. chrM
Description
A simple extension to the FaFile class that allows one to include a list of circular ranges, e.g. chrM
Fields
circularRangesA character vector describing which seqnames have circular ranges
Examples
mytempfile=tempfile()
writeXStringSet(setNames(DNAStringSet(c('AAAAAAAAGG','AAAAAAAAGG')),
c('chrM','chr2')),filepath=mytempfile)
Rsamtools::indexFa(mytempfile)
cREF<-FaFile_Circ(Rsamtools::FaFile(mytempfile),circularRanges='chrM')
cREF
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.