This function creates the Ribo-seQC html report based on the Ribo-seQC analysis files
create_html_report(input_files, input_sample_names, output_file, extended = F)
Character vector with full paths to data files
Character vector containing input names (max. 5 characters per name).
Must be of same length as
String; full path to html report file.
creates a large html report including codon occupancy for each read length. Defaults to
This function creates the html report visualizing the RiboseQC analysis data.
Input are two lists of the same length:
input_files: list of full paths to one or multiple input files
(Ribo-seQC analysis files generated with
input_sample_names: list of corresponding names describing the file content in max. 5 characters
(these are used as names in the report).
For the report, a RMarkdown file is rendered as html document, saved as
Additionally, all figures in the report are saved as PDF figures in an extra folder in the same directory as the report html file.
output_file <- "\mydir\myreport.html" will generate
the html report
\mydir\myreport_plots\ for the RDS object files to be stored in.
The function saves the html report file with the file path
a folder containing all figures shown in the html report as RDS object files (located in the same directory as the html report).
Dominique Sydow, [email protected]
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