inst/example/example.R
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
###### dseq-GATK
SEQprocess(project.name="Dseq-GATK-variantcall",
fastq.dir="[FastQC directory]",
output.dir="[Output directory]",
config.fn=system.file("data", "WGS.GATK_ex.config.R", package="SEQprocess"),
type="WGS",
pipeline="GATK",
mc.cores=1,
run.cmd=TRUE)
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
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###### dseq-GATK
SEQprocess(project.name="Dseq-GATK-variantcall",
fastq.dir="[FastQC directory]",
output.dir="[Output directory]",
config.fn=system.file("data", "WGS.GATK_ex.config.R", package="SEQprocess"),
type="WGS",
pipeline="GATK",
mc.cores=1,
run.cmd=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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