R/cancerEquivSorensen.R

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

#' An example of an object of class "AllEquivSDhtest" resulting from a call to 'allEquivTestSorensen'
#'
#' The Sorensen-Dice test (normal asymptotic version) performed on the cancer gene lists in data
#' \code{\link{allOncoGeneLists}} which may be charged from this package.
#' The test is iterated for all GO ontologies and for GO levels 3 to 10. These results are not
#' automatically updated for changes in these gene lists and Bioconductor or Go updates, take them
#' just as an illustrative example. The present version was obtained under Bioconductor 3.17.
#'
#' For each ontology and GO level, the result contains the result of all pairwise tests of equivalence
#' between the cancer gene lists.
#'
#' @format An object of class "AllEquivSDhtest" inheriting from class "list". Each one of its elements, named
#' BP, CC and MF respectively, corresponds to a GO ontology. It is itself a list of length 8 whose elements
#' are named as "Level 3" to "Level 10". For each combination of ontology and level, there is an object of
#' class "equivSDhtestList" codifying the result of all pairwise tests between these cancer gene lists.
#' @source \url{http://www.bushmanlab.org/links/genelists}
#' @usage data(cancerEquivSorensen)
"cancerEquivSorensen"