API for paodan/studySeu
Seurat : R toolkit for single cell genomics
| Global functions | |
|---|---|
| BuildSNN | Man page |
| CalcConnectivity | Source code |
| CalcSNNDense | Source code |
| CalcSNNSparse | Source code |
| DBclust_dimension | Man page |
| FindClusters | Man page |
| GroupSingletons | Source code |
| Hbeta | Source code |
| Kclust_dimension | Man page |
| KullbackFun | Source code |
| RegressOut | Man page |
| RunClassifier | Source code |
| RunModularityClustering | Source code |
| ScaleData | Man page |
| ValidateClusters | Man page |
| ValidateSpecificClusters | Man page |
| addImputedScore | Man page |
| addMetaData | Man page |
| addSmoothedScore | Man page |
| ainb | Source code |
| all.neighbor.cells | Source code |
| anotinb | Source code |
| arrange | Source code |
| auc | Source code |
| aucFxn | Source code |
| average.expression | Man page |
| average.pca | Man page |
| batch.gene | Man page |
| bimod.diffExp.test | Source code |
| bimodLikData | Source code |
| buildClusterTree | Man page |
| calc.drop.prob | Source code |
| calcFP | Source code |
| calcMedians | Source code |
| calcResid | Source code |
| calcResidLog | Source code |
| calcTP | Source code |
| cell.centroid | Source code |
| cell.centroid.x | Source code |
| cell.centroid.y | Source code |
| cellPlot | Man page |
| cluster.alpha | Man page |
| compareBins | Source code |
| comparePCA | Source code |
| corCellWeightFast | Source code |
| covCellWeightFast | Source code |
| custom.dist | Source code |
| cv | Source code |
| d2p_cell | Source code |
| diff.t.test | Man page |
| diffAUC | Source code |
| diffExp.test | Man page |
| diffLRT | Source code |
| diffTobit | Source code |
| dim.plot | Man page |
| doHeatMap | Man page |
| doKMeans | Man page |
| dot.plot | Man page |
| empP | Source code |
| exact.cell.centroid | Source code |
| expAlpha | Source code Source code |
| expMean | Source code |
| expSD | Source code |
| expVar | Source code |
| extract_field | Source code |
| facet_wrap_labeller | Source code |
| feature.heatmap | Man page |
| feature.plot | Man page |
| fetch.closest | Source code |
| fetch.data | Man page |
| fetch.mincells | Source code |
| find.markers | Man page |
| find.markers.node | Man page |
| findNGene | Source code |
| find_all_markers | Man page |
| fit.gene.k | Man page |
| genCols | Source code |
| genePlot | Man page |
| genes.ca.range | Source code |
| get.centroids | Man page |
| getAB | Source code |
| getCoefs | Source code |
| getDescendants | Source code |
| getLeftDecendants | Source code |
| getRightDecendants | Source code |
| getSmooth | Source code |
| getStat | Source code |
| getStat1 | Source code |
| getStat2 | Source code |
| getStat3 | Source code |
| gg.legend.pts | Source code |
| gg.legend.text | Source code |
| gg.xax | Source code |
| gg.yax | Source code |
| gtCut | Source code |
| humpCt | Source code |
| humpMean | Source code |
| humpVar | Source code |
| icHeatmap | Man page |
| icTopGenes | Man page |
| ica | Man page |
| ica.plot | Man page |
| init | Source code |
| initial.mapping | Man page |
| iter.k.fit | Source code |
| jackF | Source code |
| jackRandom | Source code |
| jackStraw | Man page |
| jackStrawF | Source code |
| jackStrawPlot | Man page |
| kill.ifnull | Source code |
| lasso.fxn | Source code |
| logMeanMinus | Source code |
| logVarDivMean | Source code |
| logVarMinus | Source code |
| logVarMinus2 | Source code |
| log_add | Source code |
| makeAlnPlot | Source code |
| makeScorePlot2 | Source code |
| map.cell.score | Source code |
| marker.auc.test | Source code |
| marker.test | Man page |
| mean.var.plot | Man page |
| meanNormFunction | Source code |
| meanVarPlot | Source code |
| mergeDescendents | Source code |
| minmax | Source code |
| minusc | Source code |
| minusr | Source code |
| multiplotList | Source code |
| nb.residuals | Source code |
| neighbor.cells | Source code |
| normal.sample | Source code |
| pcHeatmap | Man page |
| pcTopCells | Man page |
| pcTopGenes | Man page |
| pca | Man page |
| pca.plot | Man page |
| pca.sig.genes | Man page |
| plot.Vln | Source code |
| plotClusterTree | Man page |
| plotNoiseModel | Man page |
| plotVln | Source code |
| print.pca | Man page |
| project.pca | Man page |
| project_map | Source code |
| quickRNAHuman | Source code |
| r_wrapper | Source code |
| refined.mapping | Man page |
| regression.sig | Source code |
| removeNode | Source code |
| removeRedundantClique | Source code |
| rename.ident | Man page |
| reorder.ident | Man page |
| rp | Source code |
| run_diffusion | Man page |
| run_tsne | Man page |
| same | Source code |
| scaleSCMatrix2 | Source code |
| sensitivityCurve | Source code |
| set.all.ident | Man page |
| set.ident | Man page |
| set.ifnull | Source code |
| setCol | Source code |
| setRow | Source code |
| setWt1 | Source code |
| setWtMatrix1 | Source code |
| setup | Man page |
| seurat | Man page |
| seurat-class | Man page |
| shift.cell | Source code |
| shuffleMatRow | Source code |
| situ3d | Source code |
| sizeCliqueIntersection | Source code |
| sort.column | Source code |
| sub.string | Source code |
| subSort | Source code |
| subc | Source code |
| subr | Source code |
| subsetCells | Man page |
| subsetData | Man page |
| subsetMatrix | Source code |
| tobit.diffExp.test | Source code |
| tobit.test | Man page |
| tobit_fitter | Source code |
| topGenesForDim | Source code |
| translate.dim.code | Source code |
| tsne.plot | Man page |
| viz.ica | Man page |
| viz.pca | Man page |
| vlnPlot | Man page |
| vminusc | Source code |
| vp.layout | Source code |
| vsubc | Source code |
| weighted.euclidean | Source code |
| which.cells | Man page |
| whichNotZero | Source code |
| writ.table | Source code |
| wtCov | Source code |
| zf.anchor.map | Source code |
| zf.anchor.render | Source code |
| zf.cells.render | Source code |
| zf.insitu.dorsal | Source code |
| zf.insitu.lateral | Source code |
| zf.insitu.side | Source code |
| zf.insitu.vec.lateral | Source code |
| zf.insitu.ventral | Source code |
