dumpUniprotDb: Feeding BED: Dump and preprocess flat dat files fro Uniprot

In patzaw/BED: Biological Entity Dictionary (BED)

Feeding BED: Dump and preprocess flat dat files fro Uniprot

Description

Not exported to avoid unintended modifications of the DB.

Usage

dumpUniprotDb(
  taxOfInt,
  release,
  ddir,
  ftp = "ftp://ftp.expasy.org/databases/uniprot",
  env = parent.frame(n = 1)
)

Arguments

taxOfInt	the organism of interest. Only human ("9606"), mouse ("10090") and rat ("10116") are supported
release	the release of interest (check if already downloaded)
ddir	path to the directory where the data should be saved
ftp	location of the ftp site
env	the R environment in which to load the tables when built

patzaw/BED documentation built on April 25, 2024, 10:19 a.m.