exploreConvPath: Explore the shortest convertion path between two identifiers

In patzaw/BED: Biological Entity Dictionary (BED)

Explore the shortest convertion path between two identifiers

Description

This function uses visNetwork to draw all the shortest convertion paths between two identifiers (including ProbeID).

Usage

exploreConvPath(
  from.id,
  to.id,
  from,
  from.source,
  to,
  to.source,
  edgeDirection = FALSE,
  showLegend = TRUE,
  verbose = FALSE
)

Arguments

from.id	the first identifier
to.id	the second identifier
from	the type of entity: listBe() or Probe. Guessed if not provided
from.source	the identifier source: database or platform. Guessed if not provided
to	the type of entity: listBe() or Probe. Guessed if not provided
to.source	the identifier source: database or platform. Guessed if not provided
edgeDirection	a logical value indicating if the direction of the edges should be drawn.
showLegend	boolean. If TRUE the legend is displayed.
verbose	if TRUE the cypher query is shown

Examples

## Not run: 
exploreConvPath(
   from.id="ENST00000413465",
   from="Transcript", from.source="Ens_transcript",
   to.id="ENSMUST00000108658",
   to="Transcript", to.source="Ens_transcript"
)

## End(Not run)

patzaw/BED documentation built on Dec. 13, 2024, 4:29 a.m.