API for patzaw/BED
Biological Entity Dictionary (BED)

Global functions
BED	Man page
BEIDList	Man page Source code
BEIDs	Man page Source code
`metadata<-.BEIDList`	Source code
`metadata<-`	Source code
beIDsToAllScopes	Man page Source code
bedCall	Man page Source code
bedImport	Man page Source code
beidsServer	Man page Source code
beidsUI	Man page Source code
c.BEIDList	Source code
cacheBedCall	Man page Source code
cacheBedResult	Man page Source code
checkBeIds	Man page Source code
checkBedCache	Man page Source code
checkBedConn	Man page Source code
cleanDubiousXRef	Man page Source code
clearBedCache	Man page Source code
compareBedInstances	Man page Source code
connectToBed	Man page Source code
convBeIdLists	Man page Source code
convBeIds	Man page Source code
convDfBeIds	Man page Source code
dumpEnsCore	Man page Source code
dumpNcbiDb	Man page Source code
dumpNcbiTax	Man page Source code
dumpUniprotDb	Man page Source code
exploreBe	Man page Source code
exploreConvPath	Man page Source code
filterByBEID	Man page Source code
filterByBEID.BEIDList	Source code
findBe	Man page Source code
findBeids	Man page Source code
firstCommonUpstreamBe	Man page Source code
focusOnScope	Man page Source code
focusOnScope.BEIDList	Man page Source code
forgetBedConnection	Man page Source code
format.BEIDList	Source code
genBePath	Man page Source code
genProbePath	Man page Source code
geneIDsToAllScopes	Man page Source code
getAllBeIdSources	Man page Source code
getBeIdConvTable	Man page Source code
getBeIdDescription	Man page Source code
getBeIdNameTable	Man page Source code
getBeIdNames	Man page Source code
getBeIdSymbolTable	Man page Source code
getBeIdSymbols	Man page Source code
getBeIdURL	Man page Source code
getBeIds	Man page Source code
getDirectOrigin	Man page Source code
getDirectProduct	Man page Source code
getEnsemblGeneIds	Man page Source code
getEnsemblPeptideIds	Man page Source code
getEnsemblTranscriptIds	Man page Source code
getGeneDescription	Man page Source code
getHomTable	Man page Source code
getNcbiGeneTransPep	Man page Source code
getOrgNames	Man page Source code
getRelevantIds	Man page Source code
getTargetedBe	Man page Source code
getTaxId	Man page Source code
getUniprot	Man page Source code
guessIdOrigin	Man page Source code
guessIdScope	Man page Source code
highlightText	Source code
identicalScopes	Man page Source code
is.BEIDList	Man page Source code
largestBeSource	Man page Source code
length.BEIDList	Source code
listBe	Man page Source code
listBeIdSources	Man page Source code
listDBAttributes	Man page Source code
listOrganisms	Man page Source code
listPlatforms	Man page Source code
loadBE	Man page Source code
loadBENames	Man page Source code
loadBESymbols	Man page Source code
loadBEVersion	Man page Source code
loadBeAttribute	Man page Source code
loadBedModel	Man page Source code
loadBedOtherIndexes	Man page Source code
loadBedResult	Man page Source code
loadCodesFor	Man page Source code
loadCorrespondsTo	Man page Source code
loadHistory	Man page Source code
loadIsAssociatedTo	Man page Source code
loadIsExpressedAs	Man page Source code
loadIsHomologOf	Man page Source code
loadIsTranslatedIn	Man page Source code
loadLuceneIndexes	Man page Source code
loadNCBIEntrezGOFunctions	Man page Source code
loadNcbiTax	Man page Source code
loadOrganisms	Man page Source code
loadPlf	Man page Source code
loadProbes	Man page Source code
lsBedCache	Man page Source code
lsBedConnections	Man page Source code
metadata	Man page Source code
metadata.BEIDList	Source code
metadata<-	Man page
moduleServer	Source code
print.BEIDList	Source code
registerBEDB	Man page Source code
scope	Man page Source code
scope.BEIDList	Source code
scopes	Man page Source code
searchBeid	Man page Source code
searchId	Man page Source code
setBedVersion	Man page Source code
showBedDataModel	Man page Source code
stack.BEIDList	Source code