findBeids: Find Biological Entity identifiers

In patzaw/BED: Biological Entity Dictionary (BED)

Find Biological Entity identifiers

Description

Find Biological Entity identifiers

Usage

findBeids(toGene = TRUE, ...)

Arguments

toGene	focus on gene entities (default=TRUE): matches from other BE are converted to genes.
...	parameters for beidsServer

Value

NULL if not any result, or a data.frame with the selected values and the following column:

• value: the BE identifier

• preferred: preferred identifier for the same BE in the same scope

• be: the type of biological entity

• source: the source of the identifier

• organism: the organism of the BE

• canonical (if toGene==TRUE): canonical gene product? (if known)

• symbol: the symbol of the identifier (if any)

patzaw/BED documentation built on April 25, 2024, 10:19 a.m.