View source: R/getDirectProduct.R
getDirectProduct | R Documentation |
The product is directly taken as provided by the original database. This function does not return indirect relationships.
getDirectProduct(
ids,
sources = NULL,
process = c("is_expressed_as", "is_translated_in", "codes_for"),
canonical = NA
)
ids |
list of origin identifiers |
sources |
a character vector corresponding to the possible origin ID sources. If NULL (default), all sources are considered |
process |
the production process among: "is_expressed_as", "is_translated_in", "codes_for". |
canonical |
If TRUE returns only canonical production process. If FALSE returns only non-canonical production processes. If NA (default) canonical information is taken into account. |
a data.frame with the following columns:
origin: the origin BE identifiers
osource: the origin database
product: the product BE identifiers
psource: the production database
canonical: whether the production process is canonical or not
The process is also returned as an attribute of the data.frame.
getDirectOrigin, convBeIds
## Not run:
oriId <- c("10", "100")
res <- getDirectProduct(
ids=oriId,
source="EntrezGene",
process="is_expressed_as",
canonical=NA
)
attr(res, "process")
## End(Not run)
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