getBeIdNames: Get names of Biological Entity identifiers

In patzaw/BED: Biological Entity Dictionary (BED)

Get names of Biological Entity identifiers

Description

Get names of Biological Entity identifiers

Usage

getBeIdNames(ids, be, source, organism, limForCache = 4000, ...)

Arguments

ids	list of identifiers
be	one BE. Guessed if not provided
source	the BE ID database. Guessed if not provided
organism	organism name. Guessed if not provided
limForCache	if there are more ids than limForCache results are collected for all IDs (beyond provided ids) and cached for futur queries. If not, results are collected only for provided ids and not cached.
...	params for the getBeIdNameTable function

Value

a data.frame mapping BE IDs and names with the following fields:

• id: the BE ID

• name: the corresponding name

• canonical: true if the name is canonical for the direct BE ID (often FALSE for backward compatibility)

• direct: true if the name is directly related to the BE ID

• preferred: true if the id is the preferred identifier for the BE

• entity: (optional) the technical ID of to BE

See Also

getBeIdNameTable, getBeIdSymbols

Examples

## Not run: 
getBeIdNames(
   ids=c("10", "100"),
   be="Gene",
   source="EntrezGene",
   organism="human"
)

## End(Not run)

patzaw/BED documentation built on Dec. 13, 2024, 4:29 a.m.