cn_compileGRNassessments: compile results of assessing GRNs for multiple TFs
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology

cn_compileGRNassessments

R Documentation

compile results of assessing GRNs for multiple TFs

Description

result can be immediately plotted

Usage

cn_compileGRNassessments(prs)

Arguments

prs

result of running cn_assessGRN

Value

data frame

Examples

prList<-cn_assessGRN(zscores, gs, random=TRUE)
assessedGRN<-cn_compileGRNassessments(prList)
ggplot(assessedGRN, aes(x=factor(Score), y=Fold)) +
 geom_boxplot(alpha=.75,colour="black", outlier.colour="#BDBDBD", outlier.size=.5, fill="#FF9999") +
 theme_bw() + ggtitle("AUPR Fold increase") + ylim(0,15) + ylab("AUPR fold improvement over random") + 
 xlab("GRN Z-score threshold")

pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.