cn_make_processor: make a CellNet object

cn_make_processorR Documentation

make a CellNet object

Description

Does lots of stuff, but mostly you will care about the fact that it trains C/T classifiers

Usage

cn_make_processor(expTrain, stTrain, ctGRNs, dLevel = "description1",
  classWeight = TRUE, exprWeight = TRUE, sidCol = "sample_id")

Arguments

expTrain

expression matrix

stTrain

sample table

ctGRNs

result of running cn_grnDoRock

dLevel

sample table column name to operate on

classWeight

weight GRN est by classification importance

exprWeight

weight GRN est by gene expression

sidCol

column in stTrain that contains unique id for each sample and is the colname in expTrain

Value

cnProc


pcahan1/CellNet documentation built on July 5, 2022, 5:06 a.m.