cn_s3_fetchFastq: Fetch fastq files from S3

cn_s3_fetchFastqR Documentation

Fetch fastq files from S3

Description

It assumes that the files are publicly accessible. If not then you should use s3_get after you have run aws configure and enter your aws credentials

Usage

cn_s3_fetchFastq(bucket, path, sampTab, fnameCol = "fname",
  compressed = NA)

Arguments

bucket

name of bucket

path

path to fastqs

sampTab

sample table with a column fname listing the fastq files

fnameCol

name of column listing fastq files

Value

sammple table with de-compressed file names replacing old file names


pcahan1/CellNet documentation built on July 5, 2022, 5:06 a.m.