cn_s3_fetchFastq: Fetch fastq files from S3
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
cn_s3_fetchFastq R Documentation
Fetch fastq files from S3
Description
It assumes that the files are publicly accessible. If not then you should use s3_get after you have run aws configure and enter your aws credentials
Usage
cn_s3_fetchFastq(bucket, path, sampTab, fnameCol = "fname",
compressed = NA)
Arguments
bucket
name of bucket
path
path to fastqs
sampTab
sample table with a column fname listing the fastq files
fnameCol
name of column listing fastq files
Value
sammple table with de-compressed file names replacing old file names
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
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| cn_s3_fetchFastq | R Documentation |
Fetch fastq files from S3
Description
It assumes that the files are publicly accessible. If not then you should use s3_get after you have run aws configure and enter your aws credentials
Usage
cn_s3_fetchFastq(bucket, path, sampTab, fnameCol = "fname",
compressed = NA)
Arguments
bucket |
name of bucket |
path |
path to fastqs |
sampTab |
sample table with a column fname listing the fastq files |
fnameCol |
name of column listing fastq files |
Value
sammple table with de-compressed file names replacing old file names
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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