API for pcahan1/CellNet
Assess and improve cell fate engineering with network biology

Global functions
GEP_makeMean Man page
Norm_cleanExp Man page
Norm_cleanPropRaw Man page
Norm_loadAnnotation Man page
Norm_preNormRaw Man page
Norm_quantNorm Man page
cleanup Man page Source code
cn_HmClass Man page
cn_HmClass_disease Man page
cn_HmVars Man page
cn_MakeTLs Man page Source code
cn_addAUPRs Man page
cn_apply Man page
cn_assessGRN Man page
cn_barplot_grnSing Man page
cn_barplot_grnSing_base Man page
cn_calcPRs Man page
cn_clPerf Man page
cn_classAssess Man page
cn_class_perf_hm_ordered Man page Source code
cn_classify Man page
cn_clr Man page
cn_compileGRNassessments Man page
cn_computeAUCPR Man page
cn_convertPR Man page
cn_correctZmat Man page
cn_eval Man page
cn_extractRegsDF Man page
cn_extractSubNets Man page
cn_extract_SN_DF Man page
cn_findSensAt Man page
cn_findSpecGenes Man page
cn_getRawGRN Man page
cn_get_targets Man page Source code
cn_get_targets_of Man page Source code
cn_makeClassifier Man page
cn_makeRFs Man page
cn_makeSGs Man page
cn_makeTFtable Man page
cn_make_grn Man page
cn_make_processor Man page
cn_make_tVals Man page
cn_make_tVals_predict Man page
cn_netScores Man page
cn_nis Man page
cn_nis_all Man page
cn_normalizeScores Man page
cn_outputRes Man page
cn_rawScore Man page
cn_rectArea Man page
cn_remake_processor Man page
cn_s3_fetchFastq Man page
cn_salmon Man page
cn_sampR_to_pattern Man page
cn_score Man page
cn_setup Man page
cn_specGRNs Man page
cn_specGenesAll Man page
cn_splitMakeAssess Man page
cn_summ_AUPRs Man page
cn_testPattern Man page Source code
cn_tfScore Man page
cn_trainNorm Man page
cn_writeReadme Man page
delete_par Man page
downSampleW Man page
expr_readSampTab Man page
expr_reorder Man page
fastq_readLength Man page
fastq_trim Man page
feature_count_par Man page
fetchAndConvert Man page
fetchIndexHandler Man page
fetch_salmon_indices Man page
find_tfs Man page
gene_expr_sum Man page
geo_fixNames Man page
get_grn_scores Man page
grn_corr_round Man page
grn_zscores Man page
hisat_QC_align Man page
hisat_QC_aligns Man page
hisat_findIndices Man page
hsTFs Man page
htseqCount Man page
ig_tabToIgraph Man page
mat_zscores Man page
minDif Man page
mmTFs Man page
mp_rainbowPlot Man page
multiplot Man page Source code
ordered_class_perf_hm Man page Source code
pdf_classification_hm Man page
pdf_grn_status Man page
pdf_grn_status_by_CT Man page
pdf_grn_status_by_dlevel Man page
pdf_nis_plots Man page
plot_class_PRs Man page
plot_nis Man page
pool_auPRs Man page
processSRA Man page
qcAndSalmon Man page
qc_analysis Man page
randomize Man page Source code
s3_get Man page
s3_listDir Man page
s3_put Man page
salmon_load_tranEst Man page
salmon_par Man page
samp_for_class Man page
sample_profiles_grn Man page
sra_breakTable Man page
sra_delete Man page
sra_fetch Man page
sra_parse Man page
subSamp_for_class Man page
subsamp_fastqs Man page
trans_dNorm Man page
trans_eShift Man page
trans_fetch_index Man page
trans_rnaseq Man page
utils_count_comments Man page
utils_loadObject Man page
utils_log Man page
utils_myDate Man page
utils_myDist Man page
utils_strip_fname Man page
utils_stripwhite Man page
utils_tarcompress_dir Man page
utils_unpack Man page
weighted_down Man page
pcahan1/CellNet documentation built on July 5, 2022, 5:06 a.m.