plot_nis: boxplot of network influence scores
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
plot_nis R Documentation
boxplot of network influence scores
Description
NIS<0 means that the expression of the TF is lower in query samples as compared to target cell type, and magnitude determined by number and dysregualtion of target genes
Usage
plot_nis(tfScores, targetCT, sampTab, group, limitTo = 20,
dLevel = "description1")
Arguments
tfScores
result of running cn_nis_all
targetCT
what is the target cell type?
sampTab
sample table to select subset to plot
group
which subset to plot
limitTo
number of TFs to show
dLevel
level to group on
Value
ggplot object of box and whiskers
Examples
plot_nis(tfScores, "hspc", sampTab, "day21")
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
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| plot_nis | R Documentation |
boxplot of network influence scores
Description
NIS<0 means that the expression of the TF is lower in query samples as compared to target cell type, and magnitude determined by number and dysregualtion of target genes
Usage
plot_nis(tfScores, targetCT, sampTab, group, limitTo = 20,
dLevel = "description1")
Arguments
tfScores |
result of running cn_nis_all |
targetCT |
what is the target cell type? |
sampTab |
sample table to select subset to plot |
group |
which subset to plot |
limitTo |
number of TFs to show |
dLevel |
level to group on |
Value
ggplot object of box and whiskers
Examples
plot_nis(tfScores, "hspc", sampTab, "day21")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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