cn_remake_processor: make a CellNet object from an existing one with subset of...

In pcahan1/CellNet: Assess and improve cell fate engineering with network biology

make a CellNet object from an existing one with subset of genes and/or new expTrain

Description

Does lots of stuff, but mostly you will care about the fact that it trains C/T classifiers

Usage

cn_remake_processor(cnProc, newGenes = NA, expTrain = NA,
  sidCol = "sample_id")

Arguments

cnProc	old cnProc
newGenes	optional gene subset to use
expTrain	optional new expTrain
sidCol	column in stTrain that contains unique id for each sample and is the colname in expTrain
ctGRNs	result of running cn_grnDoRock
dLevel	sample table column name to operate on
classWeight	weight GRN est by classification importance
exprWeight	weight GRN est by gene expression

Value

cnProc

pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.