cn_remake_processor: make a CellNet object from an existing one with subset of...

cn_remake_processorR Documentation

make a CellNet object from an existing one with subset of genes and/or new expTrain

Description

Does lots of stuff, but mostly you will care about the fact that it trains C/T classifiers

Usage

cn_remake_processor(cnProc, newGenes = NA, expTrain = NA,
  sidCol = "sample_id")

Arguments

cnProc

old cnProc

newGenes

optional gene subset to use

expTrain

optional new expTrain

sidCol

column in stTrain that contains unique id for each sample and is the colname in expTrain

ctGRNs

result of running cn_grnDoRock

dLevel

sample table column name to operate on

classWeight

weight GRN est by classification importance

exprWeight

weight GRN est by gene expression

Value

cnProc


pcahan1/CellNet documentation built on July 5, 2022, 5:06 a.m.