hisat_QC_aligns: wrapper to hisat_QC_align
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
hisat_QC_aligns R Documentation
wrapper to hisat_QC_align
Description
wrapper to hisat_QC_align
Usage
hisat_QC_aligns(sampTab, indexDF, sname = "sra_id", target = "mouse",
cname = "trimNames", hisatDir = "~/rnaseq/hisat2-2.0.3-beta")
Arguments
sampTab
sample table
indexDF
index data frame result of running hisat_findIndices
sname
col name
target
species/genome
cname
colname indicating files to align
hisatDir
path to hisat
Value
sampTab with hisat QC stats added AND features counts vs target genome
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
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| hisat_QC_aligns | R Documentation |
wrapper to hisat_QC_align
Description
wrapper to hisat_QC_align
Usage
hisat_QC_aligns(sampTab, indexDF, sname = "sra_id", target = "mouse",
cname = "trimNames", hisatDir = "~/rnaseq/hisat2-2.0.3-beta")
Arguments
sampTab |
sample table |
indexDF |
index data frame result of running hisat_findIndices |
sname |
col name |
target |
species/genome |
cname |
colname indicating files to align |
hisatDir |
path to hisat |
Value
sampTab with hisat QC stats added AND features counts vs target genome
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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