fastq_trim: Trim reads to specified length
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
fastq_trim R Documentation
Trim reads to specified length
Description
Use cutadapt to trim reads from both ends to finalLength
Usage
fastq_trim(sampTab, fnameCol = "fname", finalLength = 40,
outDir = "./")
Arguments
sampTab
sample table
fnameCol
sampTab column with name of fastq files to trim
finalLength
final length of each read post trimming
outDir
where to store the trimmed fastq files
Value
sampTab with filenames of trimmed fastqs appended
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
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| fastq_trim | R Documentation |
Trim reads to specified length
Description
Use cutadapt to trim reads from both ends to finalLength
Usage
fastq_trim(sampTab, fnameCol = "fname", finalLength = 40,
outDir = "./")
Arguments
sampTab |
sample table |
fnameCol |
sampTab column with name of fastq files to trim |
finalLength |
final length of each read post trimming |
outDir |
where to store the trimmed fastq files |
Value
sampTab with filenames of trimmed fastqs appended
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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