fetchAndConvert: fetch sras and converts them to fastqs, can take a REALLY...
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
fetchAndConvert R Documentation
fetch sras and converts them to fastqs, can take a REALLY long time and is unreliable
Description
fetch sras and converts them to fastqs, can take a REALLY long time and is unreliable. SRA toolkit must be installed and configured. Make sure the store the SRAs on a drive with lots of space. Must be consistent with tmpPath.
Usage
fetchAndConvert(sampTab, tmpPath = "/media/ephemeral0/dat")
Arguments
sampTab
sample table
tmpPath
where sras are stored
Value
sample table with read length appended
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
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| fetchAndConvert | R Documentation |
fetch sras and converts them to fastqs, can take a REALLY long time and is unreliable
Description
fetch sras and converts them to fastqs, can take a REALLY long time and is unreliable. SRA toolkit must be installed and configured. Make sure the store the SRAs on a drive with lots of space. Must be consistent with tmpPath.
Usage
fetchAndConvert(sampTab, tmpPath = "/media/ephemeral0/dat")
Arguments
sampTab |
sample table |
tmpPath |
where sras are stored |
Value
sample table with read length appended
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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