fetchIndexHandler: wrapper to fetch files needed to run salmon in case of errors
In pcahan1/CellNet: Assess and improve cell fate engineering with network biology
fetchIndexHandler R Documentation
wrapper to fetch files needed to run salmon in case of errors
Description
fetch files needed to run salmon
Usage
fetchIndexHandler(destination = "/media/ephemeral1/dat/ref",
species = "mouse", bucket = "cellnet-rnaseq", dir = "ref",
iFile = "salmon.index.mouse.050316.tgz")
Arguments
destination
where to put the indices
species
mouse or human
bucket
where to get them
dirw
hat path on s3 to get them
salmonVersion
version of salmon, if > 0.6 gets latest indices
Value
nothing
pcahan1/CellNet documentation built on May 18, 2023, 4:58 p.m.
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| fetchIndexHandler | R Documentation |
wrapper to fetch files needed to run salmon in case of errors
Description
fetch files needed to run salmon
Usage
fetchIndexHandler(destination = "/media/ephemeral1/dat/ref",
species = "mouse", bucket = "cellnet-rnaseq", dir = "ref",
iFile = "salmon.index.mouse.050316.tgz")
Arguments
destination |
where to put the indices |
species |
mouse or human |
bucket |
where to get them |
dirw |
hat path on s3 to get them |
salmonVersion |
version of salmon, if > 0.6 gets latest indices |
Value
nothing
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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