cn_classAssess: Assess classifiers based on validation data

In pcahan1/singleCellNet: cell identity from single cell RNA-Seq data

Description

Assess classifiers based on validation data

Usage

cn_classAssess(ct_scores, stVal, classLevels = "description2",
  dLevelSID = "sample_id", resolution = 0.005)

Arguments

ct_scores	matrix of classification scores, rows = classifiers, columns = samples, colnames=sampleids
stVal	sample table
classLevels	column name of stVal to use as ground truth to assess classifiers
dLevelSID	column to indicate sample id
resolution	increment at which to evalutate classification

Value

list of data frames with threshold, sens, precision

pcahan1/singleCellNet documentation built on April 9, 2021, 8:49 a.m.