ptGetTop: Find the best gene pairs for training

Description Usage Arguments Value

View source: R/tsp_rf.R

Description

Find the gene pairs that most distinguish a cancer group from the rest

Usage

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ptGetTop(expDat, cell_labels, cgenes_list = NA, topX = 50,
  sliceSize = 5000, quickPairs = TRUE)

Arguments

expDat

expDat

cell_labels

named vector, value is grp, name is cell name

cgenes_list

the list of labelled cgenes

topX

number of genepairs for training

sliceSize

the size of the slice for pair transform. Default at 5e3

quickPairs

TRUE if wanting to select the gene pairs in a quick fashion

Value

vector of top gene-pair names


pcahan1/singleCellNet documentation built on April 9, 2021, 8:49 a.m.