sc_classAssess: assess the classifiers performance based on validation data

Description Usage Arguments

Description

assess the classifiers performance based on validation data

Usage

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sc_classAssess(stDat, washedDat, dLevel = "description1",
  dLevelSID = "sample_name", minCells = 40, dThresh = 0,
  propTrain = 0.25, nRand = 50, nTrees = 2000, resolution = 0.005)

Arguments

stDat

sample table

dThresh

detection threshold

propTrain

the proportion of the training data desire

nRand

the number of random sample one wants to generate

nTrees

number of branches one would like to build on the random forest classifier

expDat

normalized expression matrix

nimCells

the minimal number of cells one would like to have in each cell type


pcahan1/singleCellNet documentation built on April 9, 2021, 8:49 a.m.