assess the classifiers performance based on validation data
1 2 3 | sc_classAssess(stDat, washedDat, dLevel = "description1",
dLevelSID = "sample_name", minCells = 40, dThresh = 0,
propTrain = 0.25, nRand = 50, nTrees = 2000, resolution = 0.005)
|
stDat |
sample table |
dThresh |
detection threshold |
propTrain |
the proportion of the training data desire |
nRand |
the number of random sample one wants to generate |
nTrees |
number of branches one would like to build on the random forest classifier |
expDat |
normalized expression matrix |
nimCells |
the minimal number of cells one would like to have in each cell type |
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