Description Usage Arguments Value
based on idea that reliably detected genes will either be detected in many cells, or highly expressed in a small cels of cells (or both
1 | sc_filterGenes(geneStats, alpha1 = 0.1, alpha2 = 0.01, mu = 2)
|
geneStats |
result of running sc_statTab |
alpha1 |
proportion of cells in which a gene must be considered detected (as defined in geneStats) |
alpha2 |
lower proportion of cells for genes that must have higher expression level |
mu |
threshold, average expression level of genes passing the lower proportion criteria |
vector of gene symbols
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