sc_filterGenes: find genes that pass criteria

Description Usage Arguments Value

Description

based on idea that reliably detected genes will either be detected in many cells, or highly expressed in a small cels of cells (or both

Usage

1
sc_filterGenes(geneStats, alpha1 = 0.1, alpha2 = 0.01, mu = 2)

Arguments

geneStats

result of running sc_statTab

alpha1

proportion of cells in which a gene must be considered detected (as defined in geneStats)

alpha2

lower proportion of cells for genes that must have higher expression level

mu

threshold, average expression level of genes passing the lower proportion criteria

Value

vector of gene symbols


pcahan1/singleCellNet documentation built on April 9, 2021, 8:49 a.m.