Description Usage Arguments Value
compile genePairs comparison matrix for users to elucidate the biological significance behind classification results
1 2 3 | compareGenePairs(query_exp, training_exp, training_st, classCol,
sampleCol = NULL, RF_classifier, numPairs = 20,
trainingOnly = TRUE)
|
query_exp |
the expression matrix of query samples |
training_exp |
the expression matrix of training samples |
training_st |
the sample table of training data |
classCol |
the column name of the sample table that indicates the classes |
sampleCol |
the column name of the sample table that indicates the sample names. NULL if sample names are indcated in rownames of the sample table |
numPairs |
the number of genes to extract for comparison from most important to least important in the classifier |
cnProc |
the cnProc from the training |
gene pair comparison matrix
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