compareGenePairs: Compile genePairs comparison matrix

Description Usage Arguments Value

View source: R/plots.R

Description

compile genePairs comparison matrix for users to elucidate the biological significance behind classification results

Usage

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compareGenePairs(query_exp, training_exp, training_st, classCol,
  sampleCol = NULL, RF_classifier, numPairs = 20,
  trainingOnly = TRUE)

Arguments

query_exp

the expression matrix of query samples

training_exp

the expression matrix of training samples

training_st

the sample table of training data

classCol

the column name of the sample table that indicates the classes

sampleCol

the column name of the sample table that indicates the sample names. NULL if sample names are indcated in rownames of the sample table

numPairs

the number of genes to extract for comparison from most important to least important in the classifier

cnProc

the cnProc from the training

Value

gene pair comparison matrix


pcahan1/singleCellNet documentation built on April 9, 2021, 8:49 a.m.