Files in pdiakumis/rock
Rocking R at UMCCR
.Rbuildignore
.github/.gitignore
.github/workflows/conda.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/cnv_cnvkit.R
R/cnv_facets.R
R/cnv_general.R
R/cnv_purple.R
R/cnv_titan.R
R/cnv_truth.R
R/data.R
R/globals.R
R/hello.R
R/igv.R
R/plot_circos.R
R/plot_ideogram.R
R/plot_piano.R
R/rock-package.R
R/samplot.R
R/sv_manta.R
R/utils-shortcuts.R
R/utils.R
README.Rmd
README.md
bump.sh
codecov.yml
data-raw/cat_names.R
data/cat_names.rda
deploy/conda-recipe/build.sh
deploy/conda-recipe/meta.yaml
inst/rmarkdown/templates/my_template/skeleton/skeleton.Rmd
inst/rmarkdown/templates/my_template/template.yaml
man/bedval2igv.Rd
man/cat_names.Rd
man/circos_prep.Rd
man/cnv2igv.Rd
man/cnvkit_depth2igv.Rd
man/figures/README-bedval2igv_output.png
man/figures/README-circos-plot-manta-cnvkit-1.png
man/figures/README-circos-plot-manta-facets-1.png
man/figures/README-circos-plot-manta-purple-1.png
man/figures/README-circos-plot-manta-titan-1.png
man/figures/README-cnv2igv_output.png
man/figures/README-piano-plot-chrom-1.png
man/figures/README-piano-plot-chrom-colours-1.png
man/figures/README-piano-plot-chrom-ideo-1.png
man/figures/README-piano-plot-cnvkit-facets-purple-titan1-1.png
man/figures/perl_circos/foo_circos_cnvkit_manta.png
man/hello.Rd
man/pipe.Rd
man/plot_circos.Rd
man/plot_circos_baf.Rd
man/plot_ideogram.Rd
man/plot_piano.Rd
man/prep_cnv_circos.Rd
man/prep_cnvkit_seg.Rd
man/prep_facets_seg.Rd
man/prep_manta_vcf.Rd
man/prep_manta_vcf2.Rd
man/prep_purple_seg.Rd
man/prep_titan_seg.Rd
man/prep_truth_seg.Rd
man/read_cnv.Rd
man/read_manta_vcf.Rd
man/rock-package.Rd
man/samplot_commands.Rd
man/stamp.Rd
man/tidyeval.Rd
rock.Rproj
tests/testthat.R
tests/testthat/test-cnv-cnvkit.R
tests/testthat/test-cnv-facets.R
tests/testthat/test-cnv-purple.R
tests/testthat/test-cnv-titan.R
tests/testthat/test-hello.R
tests/testthat/test-igv.R
tests/testthat/test-plot-piano.R
tests/testthat/test-sv-manta.R
tests/testthat/test-utils.R
vignettes/.gitignore
vignettes/intro.Rmd
