Description Usage Arguments Value Examples
Reads the CNV segment TSV file output by CNVkit, FACETS, PURPLE or TitanCNA.
1 | read_cnv(cnv)
|
cnv |
Path to CNV file. |
A cnv
list containing a dataframe (tibble
) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
1 2 | fn <- system.file("extdata", "HCC2218_cnvkit-call.cns", package = "pebbles")
cnv <- read_cnv(fn)
|
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