Description Usage Arguments Value Examples
Reads the sample-titan.segs.tsv
file output by TitanCNA and exports the
CNV segment coordinates.
1 | prep_titan_seg(titan)
|
titan |
Path to TitanCNA |
A dataframe (tibble
) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
1 2 | cn <- system.file("extdata", "HCC2218_titan.segs.tsv", package = "pebbles")
prep_titan_seg(cn)
|
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