Description Usage Arguments Value Examples
Prepares a Manta VCF for display in a Perl circos plot.
1 | prep_manta_vcf2(vcf, ...)
|
vcf |
Path to Manta VCF file. Can be compressed or not. |
... |
Additional arguments for |
A dataframe (tibble
) with the following fields from the VCF:
chrom1: homo sapiens CHROM
pos1: POS
| INFO/BPI_START
pos1b: POS
| INFO/BPI_START
chrom2: CHROM
(for mate2 if BND)
pos2: INFO/END
| INFO/BPI_END
(for mate1 if BND)
pos2b: INFO/END
| INFO/BPI_END
(for mate1 if BND)
col: link colour
1 2 | vcf <- system.file("extdata", "HCC2218_manta.vcf", package = "pebbles")
prep_manta_vcf2(vcf)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.