Description Usage Arguments Value Examples
Reads the output by the FACETS emcncf
function and exports the cncf
CNV segment coordinates.
1 | prep_facets_seg(facets)
|
facets |
Path to FACETS |
A dataframe (tibble
) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
1 2 | cn <- system.file("extdata", "HCC2218_facets_cncf.tsv", package = "pebbles")
prep_facets_seg(cn)
|
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