Description Usage Arguments Value Examples
Reads the sample-purple.cnv
file output by PURPLE and exports the
CNV segment coordinates.
1 | prep_purple_seg(purple)
|
purple |
Path to PURPLE |
A dataframe (tibble
) with the following columns:
chrom: chromosome
start: start coordinate
end: end coordinate
tot_cn: total copy number estimate
1 2 | purple <- system.file("extdata", "HCC2218_purple.cnv.tsv", package = "pebbles")
prep_purple_seg(purple)
|
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