Description Usage Arguments Value Examples
Exports CNV segment coordinates for plotting in Perl Circos.
1 | prep_cnv_circos(cnv)
|
cnv |
Path to CNV call file. |
A dataframe (tibble
) with the following columns:
chrom: homo sapiens chromosome
start: start coordinate
end: end coordinate
value: total copy number estimate, minus 2
1 2 | cn <- system.file("extdata", "HCC2218_cnvkit-call.cns", package = "pebbles")
prep_cnv_circos(cn)
|
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