Description Usage Arguments Value Examples
Generates a Perl circos plot containing structural variant links, CNV calls, and BAF values from PURPLE.
1 | plot_circos_baf(purple_dir = NULL, out_dir = "circos_baf", tumor_name = NULL)
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purple_dir |
Directory where the circos files are located ('purple/circos'). |
out_dir |
Directory where the new circos plot will be written, along with the input/config files. |
tumor_name |
Tumor sample name. |
Generates a Perl circos plot in the outdir.
1 2 3 4 5 6 7 8 | ## Not run:
purple_dir <- '/path/to/purple/circos'
out_dir <- '~/Desktop/tmp/circos_new'
tumor_name <- 'sampleA_tumor'
plot_circos_baf(purple_dir, out_dir, tumor_name)
## End(Not run)
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