plot_circos_baf: Generate Perl Circos PURPLE BAF Plot
In pdiakumis/rock: Rocking R at UMCCR

Description Usage Arguments Value Examples

Generates a Perl circos plot containing structural variant links, CNV calls, and BAF values from PURPLE.

1	plot_circos_baf(purple_dir = NULL, out_dir = "circos_baf", tumor_name = NULL)

`purple_dir`	Directory where the circos files are located ('purple/circos').
`out_dir`	Directory where the new circos plot will be written, along with the input/config files.
`tumor_name`	Tumor sample name.

Generates a Perl circos plot in the outdir.

## Not run: 
purple_dir <- '/path/to/purple/circos'
out_dir <- '~/Desktop/tmp/circos_new'
tumor_name <- 'sampleA_tumor'

plot_circos_baf(purple_dir, out_dir, tumor_name)

## End(Not run)