plot_circos_baf: Generate Perl Circos PURPLE BAF Plot

Description Usage Arguments Value Examples

View source: R/plot_circos.R

Description

Generates a Perl circos plot containing structural variant links, CNV calls, and BAF values from PURPLE.

Usage

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plot_circos_baf(purple_dir = NULL, out_dir = "circos_baf", tumor_name = NULL)

Arguments

purple_dir

Directory where the circos files are located ('purple/circos').

out_dir

Directory where the new circos plot will be written, along with the input/config files.

tumor_name

Tumor sample name.

Value

Generates a Perl circos plot in the outdir.

Examples

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## Not run: 
purple_dir <- '/path/to/purple/circos'
out_dir <- '~/Desktop/tmp/circos_new'
tumor_name <- 'sampleA_tumor'

plot_circos_baf(purple_dir, out_dir, tumor_name)

## End(Not run)

pdiakumis/rock documentation built on Oct. 12, 2020, 9:38 a.m.