seurat_get_nn_graph: Get the nearest neighbor graph using Seurat
In pengminshi/MRtree: Multi-resolution Reconciled Tree
seurat_get_nn_graph R Documentation
Get the nearest neighbor graph using Seurat
Description
Get the nearest neighbor graph using Seurat
Usage
seurat_get_nn_graph(counts, metadata = NULL, npcs = 10)
Arguments
counts
ncell by ngene count matrix
metadata
a dataframe of meta data of cells
npcs
principal components for constructing the nearest neighbor graph
Value
nearest neighbor graph saved as an adjacency matrix
pengminshi/MRtree documentation built on March 6, 2023, 4:20 p.m.
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| seurat_get_nn_graph | R Documentation |
Get the nearest neighbor graph using Seurat
Description
Get the nearest neighbor graph using Seurat
Usage
seurat_get_nn_graph(counts, metadata = NULL, npcs = 10)
Arguments
counts |
ncell by ngene count matrix |
metadata |
a dataframe of meta data of cells |
npcs |
principal components for constructing the nearest neighbor graph |
Value
nearest neighbor graph saved as an adjacency matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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