VCF_split_into_scaffolds: Split a VCF file into multiple scaffold-VCFs

In pievos101/PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses

Split a VCF file into multiple scaffold-VCFs

Description

This function splits a VCF file into multiple VCFs including data for exactly one scaffold each.

Usage

VCF_split_into_scaffolds(VCF.file, output.folder)

Arguments

VCF.file	the basepath of the VCF file
output.folder	name of the folder where the VCFs should be stored

Details

The algorithm splits the VCF into multiple scaffold based VCFs and
stores the files in a given folder. This folder can be used as an input for readData(,format="VCF")

Value

TRUE

Examples

# VCF_split_into_scaffolds("VCFfile.vcf","scaffoldVCFs")
# test <- readData("scaffoldVCFs", format="VCF")

pievos101/PopGenome documentation built on May 23, 2024, 7:31 p.m.