split_data_into_GFF_features: Split the data into GFF features

In pievos101/PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses

Split the data into GFF features

Description

Splits the data into GFF feautures defined by the user.

Usage

split_data_into_GFF_features(object, gff.file, chr, feature)

Arguments

object	An object of class GENOME
gff.file	The corresponding GFF file
chr	The chromosome/scaffold identifier
feature	The feature used for splitting

Details

The algorithm splits the data into features.
A feature can be "gene", "exon" etc.
depending on what is specified in the GFF3 file.

Value

The returned value is an object of class "GENOME"
See [e-mail] and [e-mail]
after splitting the data.

Examples

# GENOME.class <- readVCF("chr1.vcf.gz",1000,"1",1,100000)
# GENOME.class.split <- split_data_into_GFF_features(GENOME.class,"Homo_sapiens.GRCh37.73.gtf", 
# "1", "gene")
# [e-mail]

pievos101/PopGenome documentation built on Feb. 24, 2023, 7:11 a.m.