API for pkrog/biodb
biodb, a library and a development framework for connecting to chemical and biological databases
| Global functions | |
|---|---|
| BiodbBiocPersistentCache | Man page |
| BiodbConfig | Man page |
| BiodbConn | Man page |
| BiodbConnBase | Man page |
| BiodbCsvEntry | Man page |
| BiodbCustomPersistentCache | Man page |
| BiodbDbInfo | Man page |
| BiodbDbsInfo | Man page |
| BiodbEntry | Man page |
| BiodbEntryField | Man page |
| BiodbEntryFields | Man page |
| BiodbFactory | Man page |
| BiodbHtmlEntry | Man page |
| BiodbJsonEntry | Man page |
| BiodbListEntry | Man page |
| BiodbMain | Man page |
| BiodbPersistentCache | Man page |
| BiodbRequest | Man page |
| BiodbRequestScheduler | Man page |
| BiodbRequestSchedulerRule | Man page |
| BiodbSdfEntry | Man page |
| BiodbSqlBinaryOp | Man page |
| BiodbSqlExpr | Man page |
| BiodbSqlField | Man page |
| BiodbSqlList | Man page |
| BiodbSqlLogicalOp | Man page |
| BiodbSqlQuery | Man page |
| BiodbSqlValue | Man page |
| BiodbTestMsgAck | Man page |
| BiodbTxtEntry | Man page |
| BiodbUrl | Man page |
| BiodbXmlEntry | Man page |
| CompCsvFileConn | Man page |
| CompCsvFileEntry | Man page |
| CompSqliteConn | Man page |
| CompSqliteEntry | Man page |
| CsvFileConn | Man page |
| ExtConnClass | Man page |
| ExtCpp | Man page |
| ExtDefinitions | Man page |
| ExtDescriptionFile | Man page |
| ExtEntryClass | Man page |
| ExtFileGenerator | Man page |
| ExtGenerator | Man page |
| ExtGitignore | Man page |
| ExtLicense | Man page |
| ExtMakefile | Man page |
| ExtPackage | Man page |
| ExtPackageFile | Man page |
| ExtRbuildignore | Man page |
| ExtReadme | Man page |
| ExtTests | Man page |
| ExtTravisFile | Man page |
| ExtVignette | Man page |
| FileTemplate | Man page |
| MassCsvFileConn | Man page |
| MassCsvFileEntry | Man page |
| MassSqliteConn | Man page |
| MassSqliteEntry | Man page |
| Progress | Man page |
| Range | Man page |
| RequestResult | Man page |
| SqliteConn | Man page |
| TestRefEntries | Man page |
| abstractClass | Man page Source code |
| abstractMethod | Man page Source code |
| biodb | Man page |
| biodb-package | Man page |
| calcDistance | Source code |
| checkDeprecatedCacheFolders | Man page Source code |
| checkEntryFields | Source code |
| checkEntryIds | Source code |
| closeMatchPpm | Man page Source code |
| compareSpectra | Source code |
| compareVersions | Source code |
| connNameToClassPrefix | Man page Source code |
| convertTolToRange | Source code |
| cosine | Source code |
| createBiodbTestInstance | Man page Source code |
| df2str | Man page Source code |
| doesRCurlRequestUrlExist | Man page Source code |
| error | Man page Source code |
| error0 | Man page Source code |
| extractVersion | Source code |
| genNewExtPkg | Man page Source code |
| getBaseUrlContent | Man page Source code |
| getBaseUrlRequestResult | Man page Source code |
| getConnClassName | Man page Source code |
| getConnTypes | Man page Source code |
| getDefaultCacheDir | Man page Source code |
| getEntryClassName | Man page Source code |
| getEntryTypes | Man page Source code |
| getFolder | Source code |
| getFolderFromVect | Source code |
| getLicenses | Man page Source code |
| getLogger | Man page Source code |
| getPkgName | Man page Source code |
| getRCurlContent | Man page Source code |
| getRCurlRequestResult | Man page Source code |
| getReposName | Man page Source code |
| getTestOutputDir | Man page Source code |
| getTestRefFolder | Source code |
| getUrlContent | Man page Source code |
| getUrlRequestResult | Man page Source code |
| listTestRefEntries | Man page Source code |
| loadFileContents | Man page Source code |
| loadTestRefEntries | Source code |
| loadTestRefEntry | Source code |
| logDebug | Man page Source code |
| logDebug0 | Man page Source code |
| logInfo | Man page Source code |
| logInfo0 | Man page Source code |
| logTrace | Man page Source code |
| logTrace0 | Man page Source code |
| lst2str | Man page Source code |
| makeRCurlOptions | Man page Source code |
| matchPpm | Source code |
| newInst | Man page Source code |
| notifyObservers | Source code |
| pbachtttarya | Source code |
| pkernel | Source code |
| prepareFileContents | Man page Source code |
| runGenericAdjustableTests | Source code |
| runGenericLongTests | Source code |
| runGenericShortTests | Source code |
| runGenericTests | Man page Source code |
| saveContentsToFiles | Man page Source code |
| simpList | Source code |
| simplifySpectrum | Source code |
| splitVersion | Source code |
| test.annotateMzValues | Source code |
| test.annotateMzValues_real_values | Source code |
| test.collapseResultsDataFrame | Source code |
| test.create.conn.with.same.url | Source code |
| test.db.copy | Source code |
| test.db.editing | Source code |
| test.db.writing | Source code |
| test.db.writing.with.col.add | Source code |
| test.entry.fields | Source code |
| test.entry.ids | Source code |
| test.entry.image.url | Source code |
| test.entry.image.url.download | Source code |
| test.entry.page.url | Source code |
| test.entry.page.url.download | Source code |
| test.getChromCol | Source code |
| test.getMzValues | Source code |
| test.msmsSearch.empty.spectrum | Source code |
| test.msmsSearch.no.ids | Source code |
| test.msmsSearch.null.spectrum | Source code |
| test.msmsSearch.self.match | Source code |
| test.nb.entries | Source code |
| test.peak.table | Source code |
| test.rt.unit | Source code |
| test.searchByName | Source code |
| test.searchCompound | Source code |
| test.searchForEntries | Source code |
| test.searchForMassSpectra | Source code |
| test.searchForMassSpectra.multiple.mz | Source code |
| test.searchForMassSpectra.with.NA.value | Source code |
| test.searchForMassSpectra.with.precursor | Source code |
| test.searchForMassSpectra.with.precursor.and.multiple.inputs | Source code |
| test.searchMsPeaks | Source code |
| test.searchMsPeaks.rt | Source code |
| test.searchMsPeaks.with.NA.value | Source code |
| test.wrong.entry | Source code |
| test.wrong.entry.among.good.ones | Source code |
| testContext | Man page Source code |
| testEntryLoading | Source code |
| testThat | Man page Source code |
| test_annotateMzValues_additional_fields | Source code |
| test_annotateMzValues_input_dataframe_untouched | Source code |
| test_annotateMzValues_input_vector | Source code |
| test_annotateMzValues_ppm_tol | Source code |
| test_cache_for_local_db | Source code |
| upgradeExtPkg | Man page Source code |
| warn | Man page Source code |
| warn0 | Man page Source code |
| wcosine | Source code |
