Files in pkrog/biodb

biodb, a library and a development framework for connecting to chemical and biological databases

R/BiodbBiocPersistentCache.R R/BiodbConfig.R R/BiodbConn.R R/BiodbConnBase.R R/BiodbCsvEntry.R R/BiodbCustomPersistentCache.R R/BiodbDbInfo.R R/BiodbDbsInfo.R R/BiodbEntry.R R/BiodbEntryField.R R/BiodbEntryFields.R R/BiodbFactory.R R/BiodbHtmlEntry.R R/BiodbJsonEntry.R R/BiodbListEntry.R R/BiodbMain.R R/BiodbPersistentCache.R R/BiodbRequest.R R/BiodbRequestScheduler.R R/BiodbRequestSchedulerRule.R R/BiodbSdfEntry.R R/BiodbSqlBinaryOp.R R/BiodbSqlExpr.R R/BiodbSqlField.R R/BiodbSqlList.R R/BiodbSqlLogicalOp.R R/BiodbSqlQuery.R R/BiodbSqlValue.R R/BiodbTestMsgAck.R R/BiodbTxtEntry.R R/BiodbUrl.R R/BiodbXmlEntry.R R/CompCsvFileConn.R R/CompCsvFileEntry.R R/CompSqliteConn.R R/CompSqliteEntry.R R/CsvFileConn.R R/ExtConnClass.R R/ExtCpp.R R/ExtDefinitions.R R/ExtDescriptionFile.R R/ExtEntryClass.R R/ExtFileGenerator.R R/ExtGenerator.R R/ExtGitignore.R R/ExtLicense.R R/ExtMakefile.R R/ExtPackage.R R/ExtPackageFile.R R/ExtRbuildignore.R R/ExtReadme.R R/ExtTests.R R/ExtTravisFile.R R/ExtVignette.R R/FileTemplate.R R/MassCsvFileConn.R R/MassCsvFileEntry.R R/MassSqliteConn.R R/MassSqliteEntry.R R/Progress.R R/Range.R R/RcppExports.R R/RequestResult.R R/SqliteConn.R R/TestRefEntries.R R/catch-routine-registration.R R/fcts_biodb.R R/fcts_deprecated.R R/fcts_ext.R R/fcts_mass.R R/fcts_misc.R R/fcts_url.R R/generic_tests.R R/package.R R/spec-dist.R R/test_framework.R README.md inst/CONTENT.md inst/extdata/ChebiExConn.R inst/extdata/ChebiExEntry.R inst/templates/Conn.R inst/templates/Entry.R inst/templates/README.md inst/templates/catch-routine-registration.R inst/templates/package.R inst/templates/test-cpp.R inst/templates/test_001_init_logging.R inst/templates/test_050_fcts.R inst/templates/test_100_generic.R inst/templates/test_200_example.R inst/templates/test_long_001_init_logging.R inst/templates/test_long_100_generic.R inst/templates/test_long_200_example.R inst/templates/testthat.R inst/templates/vignette.Rmd inst/testsrc/db_creation.R inst/vignettes_inc.R longtests/testthat.R longtests/testthat/test_long_001_init_logging.R longtests/testthat/test_long_099_extension.R longtests/testthat/test_long_100_comp.csv.file.R longtests/testthat/test_long_110_comp.sqlite.R longtests/testthat/test_long_120_mass.csv.file.R longtests/testthat/test_long_130_mass.sqlite.R man/BiodbBiocPersistentCache.Rd man/BiodbConfig.Rd man/BiodbConn.Rd man/BiodbConnBase.Rd man/BiodbCsvEntry.Rd man/BiodbCustomPersistentCache.Rd man/BiodbDbInfo.Rd man/BiodbDbsInfo.Rd man/BiodbEntry.Rd man/BiodbEntryField.Rd man/BiodbEntryFields.Rd man/BiodbFactory.Rd man/BiodbHtmlEntry.Rd man/BiodbJsonEntry.Rd man/BiodbListEntry.Rd man/BiodbMain.Rd man/BiodbPersistentCache.Rd man/BiodbRequest.Rd man/BiodbRequestScheduler.Rd man/BiodbRequestSchedulerRule.Rd man/BiodbSdfEntry.Rd man/BiodbSqlBinaryOp.Rd man/BiodbSqlExpr.Rd man/BiodbSqlField.Rd man/BiodbSqlList.Rd man/BiodbSqlLogicalOp.Rd man/BiodbSqlQuery.Rd man/BiodbSqlValue.Rd man/BiodbTestMsgAck.Rd man/BiodbTxtEntry.Rd man/BiodbUrl.Rd man/BiodbXmlEntry.Rd man/CompCsvFileConn.Rd man/CompCsvFileEntry.Rd man/CompSqliteConn.Rd man/CompSqliteEntry.Rd man/CsvFileConn.Rd man/ExtConnClass.Rd man/ExtCpp.Rd man/ExtDefinitions.Rd man/ExtDescriptionFile.Rd man/ExtEntryClass.Rd man/ExtFileGenerator.Rd man/ExtGenerator.Rd man/ExtGitignore.Rd man/ExtLicense.Rd man/ExtMakefile.Rd man/ExtPackage.Rd man/ExtPackageFile.Rd man/ExtRbuildignore.Rd man/ExtReadme.Rd man/ExtTests.Rd man/ExtTravisFile.Rd man/ExtVignette.Rd man/FileTemplate.Rd man/MassCsvFileConn.Rd man/MassCsvFileEntry.Rd man/MassSqliteConn.Rd man/MassSqliteEntry.Rd man/Progress.Rd man/Range.Rd man/RequestResult.Rd man/SqliteConn.Rd man/TestRefEntries.Rd man/abstractClass.Rd man/abstractMethod.Rd man/biodb-package.Rd man/checkDeprecatedCacheFolders.Rd man/closeMatchPpm.Rd man/connNameToClassPrefix.Rd man/createBiodbTestInstance.Rd man/df2str.Rd man/doesRCurlRequestUrlExist.Rd man/error.Rd man/error0.Rd man/genNewExtPkg.Rd man/getBaseUrlContent.Rd man/getBaseUrlRequestResult.Rd man/getConnClassName.Rd man/getConnTypes.Rd man/getDefaultCacheDir.Rd man/getEntryClassName.Rd man/getEntryTypes.Rd man/getLicenses.Rd man/getLogger.Rd man/getPkgName.Rd man/getRCurlContent.Rd man/getRCurlRequestResult.Rd man/getReposName.Rd man/getTestOutputDir.Rd man/getUrlContent.Rd man/getUrlRequestResult.Rd man/listTestRefEntries.Rd man/loadFileContents.Rd man/logDebug.Rd man/logDebug0.Rd man/logInfo.Rd man/logInfo0.Rd man/logTrace.Rd man/logTrace0.Rd man/lst2str.Rd man/makeRCurlOptions.Rd man/newInst.Rd man/prepareFileContents.Rd man/runGenericTests.Rd man/saveContentsToFiles.Rd man/testContext.Rd man/testThat.Rd man/upgradeExtPkg.Rd man/warn.Rd man/warn0.Rd tests/testthat.R tests/testthat/test-cpp.R tests/testthat/test_001_init_logging.R tests/testthat/test_005_abstract.R tests/testthat/test_007_url.R tests/testthat/test_009_range.R tests/testthat/test_010_object_printing.R tests/testthat/test_011_mass_fcts.R tests/testthat/test_012_biodb_fcts.R tests/testthat/test_013_misc_fcts.R tests/testthat/test_015_messages.R tests/testthat/test_020_config.R tests/testthat/test_025_persistent_cache.R tests/testthat/test_030_biodb.R tests/testthat/test_031_dbinfo.R tests/testthat/test_032_biodbentry.R tests/testthat/test_040_chebi.ex.R tests/testthat/test_050_factory.R tests/testthat/test_060_entry_field.R tests/testthat/test_080_scheduler.R tests/testthat/test_099_extension.R tests/testthat/test_100_comp.csv.file.R tests/testthat/test_110_comp.sqlite.R tests/testthat/test_120_mass.csv.file.R tests/testthat/test_130_mass.sqlite.R tests/testthat/test_200_lcms_annotation.R vignettes/biodb.Rmd vignettes/details.Rmd vignettes/entries.Rmd vignettes/new_connector.Rmd vignettes/new_entry_field.Rmd