#########################################################################
# rMSIproc - R package for MSI data processing
# Copyright (C) 2014 Pere Rafols Soler
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
############################################################################
#' AverageSpectrum_rMSIproc.
#'
#' Calculates the dataset average spectrum using rMSIproc implementation.
#' The average spectrum is the spectrum produced by weighting all the dataset spectra.
#'
#' @param img An rMSI object.
#' @param NumOfThreads Number of threads.The Default value is the number of cores of the machine.
#'
#' @return The average spectrum.
#' @export
#'
AverageSpectrum_rMSIproc <- function(img, NumOfThreads = parallel::detectCores())
{
dataInf <- getrMSIdataInfo(img) #Info from the img
AvgSptr <- NULL
AvgSptr<-AverageSpectrumC(dataInf$filenames, dataInf$masschannels, dataInf$nrows, dataInf$datatype, NumOfThreads)
return(AvgSptr)
}
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