API for protViz/prozor
Minimal Protein Set Explaining Peptide Spectrum Matches
| Global functions | |
|---|---|
| .adjustBreaks | Source code |
| .greedy2 | Source code |
| .makePrecursorID | Source code |
| .makenewfromto | Source code |
| .makesig | Source code |
| .matchPepsequence | Source code |
| .onAttach | Source code |
| .removeZeroRows | Source code |
| .reverseSingleSeq | Source code |
| .strReverse | Source code |
| .writeFasta | Source code |
| Cdsw | Man page |
| Cdsw-class | Man page |
| annotateAHO | Man page Source code |
| annotatePeptides | Man page Source code |
| bcd | Man page |
| computeFDR | Man page Source code |
| computeFDRwithID | Man page Source code |
| createDecoyDB | Man page Source code |
| create_fgcz_fasta_db | Man page Source code |
| euc | Source code |
| fdrSample | Man page |
| greedyRes2Matrix | Man page Source code |
| greedy_parsimony | Man page Source code |
| hardconstrain | Man page Source code |
| inter_x | Source code |
| inter_y | Source code |
| loadContaminantsFGCZ2022 | Man page Source code |
| loadContaminantsFasta2019 | Man page Source code |
| loadContaminantsFasta2021 | Man page Source code |
| load_special_prot_2024 | Man page Source code |
| load_universal_contaminants_2024 | Man page Source code |
| makeID | Man page Source code |
| makeIDUnip | Man page Source code |
| make_fasta_summary | Man page Source code |
| masses | Man page |
| mdist | Source code |
| objectiveMS1Function | Man page Source code |
| pepprot | Man page |
| plotFDR | Man page Source code |
| predictScoreFDR | Man page Source code |
| prepareMatrix | Man page Source code |
| protpepmetashort | Man page |
| prozor | Man page |
| prozor-package | Man page |
| readPeptideFasta | Man page Source code |
| readjustWindows | Man page Source code |
| removeSignalPeptide | Man page Source code |
| reverseSeq | Man page Source code |
| sdiff_x | Source code |
| sdiff_y | Source code |
| writeFasta | Man page Source code |
