create_fgcz_fasta_db: create fasta db from one or more fasta files

In protViz/prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

create fasta db from one or more fasta files

Description

create fasta db from one or more fasta files

Usage

create_fgcz_fasta_db(
  databasedirectory,
  useContaminants = loadContaminantsFGCZ2022(),
  revLab = "REV_",
  outputdir = NULL,
  make_summary = TRUE
)

Arguments

databasedirectory	directory with fasta files
useContaminants	contaminants to add
revLab	reverse label
outputdir	output directory

Value

list list(resDB, filepath , summary, mcall, dbname)

Examples

print("NO exmple since function also writes the fasta files")

protViz/prozor documentation built on Nov. 13, 2024, 12:30 a.m.