computeFDR | R Documentation |
Same as computeFDRwithID but works with decoy_hit boolean vector.
For more details and references see package vignette
vignette("TargetDecoyFDR_Example", package = "prozor")
computeFDR(score, decoy_hit, larger_better = TRUE)
score |
score |
decoy_hit |
indicates if decoy hit |
larger_better |
is larger score the better one (default TRUE) |
list with decoy_hit (indicates if decoy), score the search engine score, FDR1 false discovery rate estimated using the method of Gygi, SimpleFDR - estimated using the method of Kaell.
data(fdrSample)
fdr1 <- computeFDR(fdrSample$score, grepl("REV_",fdrSample$proteinID), larger_better = FALSE)
head(as.data.frame(fdr1))
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