makeIDUnip: make id for chain compatible with uniprot
In protViz/prozor: Minimal Protein Set Explaining Peptide Spectrum Matches
View source: R/removeSignalPeptides.R
makeIDUnip R Documentation
make id for chain compatible with uniprot
Description
make id for chain compatible with uniprot
Usage
makeIDUnip(sequence, id, sp)
Arguments
sequence
- aa sequence as string
id
uniprot id id: sp|P30443|1A01_HUMAN
sp
start position of chain numeric
Value
string consisting of sp,"-", length of sequnce
Examples
seq <- "MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGR\
GEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRN\
MKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQ\
DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRC\
VDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEI\
TLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQ\
HEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRK\
SSDRKGGSYTQAASSDSAQGSDVSLTACKV"
nam <-"sp|P30443|1A01_HUMAN"
sp <- 24
makeIDUnip(seq, nam, sp)
protViz/prozor documentation built on Oct. 17, 2023, 6:39 p.m.
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View source: R/removeSignalPeptides.R
| makeIDUnip | R Documentation |
make id for chain compatible with uniprot
Description
make id for chain compatible with uniprot
Usage
makeIDUnip(sequence, id, sp)
Arguments
sequence |
- aa sequence as string |
id |
uniprot id id: sp|P30443|1A01_HUMAN |
sp |
start position of chain numeric |
Value
string consisting of sp,"-", length of sequnce
Examples
seq <- "MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGR\
GEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRN\
MKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQ\
DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRC\
VDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEI\
TLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQ\
HEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRK\
SSDRKGGSYTQAASSDSAQGSDVSLTACKV"
nam <-"sp|P30443|1A01_HUMAN"
sp <- 24
makeIDUnip(seq, nam, sp)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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