writeFasta: write fasta lists into file

In protViz/prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

write fasta lists into file

Description

peptides which do not have protein assignment drop out

Usage

writeFasta(file, ...)

Arguments

file	where to write
...	fasta list or single file

Value

writes a file.

Examples

#example how to create a protein db with decoy sequences
library(seqinr)
#library(prozor)
file = system.file("extdata/fgcz_contaminants2021_20210929.fasta.gz",package = "prozor")
fasta = readPeptideFasta(file = file)
revfasta <- reverseSeq(fasta)
decoyDB <- c(fasta,revfasta)
stopifnot(length(decoyDB) == 2 * length(fasta))
## Not run: 
writeFasta(decoyDB, file="test.fasta")

## End(Not run)

protViz/prozor documentation built on Nov. 13, 2024, 12:30 a.m.