make_fasta_summary: make db summary which includes number of sequences, and amino...

In protViz/prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

make db summary which includes number of sequences, and amino acid statistcis

Description

make db summary which includes number of sequences, and amino acid statistcis

Usage

make_fasta_summary(resDB, old = FALSE, as_string = TRUE)

Value

array of strings which should be passed to the cat function.

Examples

file = system.file("extdata/fgcz_contaminants2022_20220405.fasta.gz",package="prozor")
xx <- prozor::readPeptideFasta(file)
cat(make_fasta_summary(xx))
rbenchmark::benchmark(make_fasta_summary(xx),replications = 10)
rbenchmark::benchmark(make_fasta_summary(xx, old = TRUE), replications = 10)
make_fasta_summary(xx, as_string = FALSE)
make_fasta_summary(xx, old =TRUE, as_string = FALSE)

protViz/prozor documentation built on Oct. 17, 2023, 6:39 p.m.