makeID: make id for chain in format sp|P30443|1A01_HUMANs25
In protViz/prozor: Minimal Protein Set Explaining Peptide Spectrum Matches

makeID

R Documentation

make id for chain in format sp|P30443|1A01_HUMANs25

Description

make id for chain in format sp|P30443|1A01_HUMANs25

Usage

makeID(sequence, id, sp)

Arguments

`sequence`	- aa sequence as string
`id`	uniprot id id: sp\|P30443\|1A01_HUMAN
`sp`	start position of chain numeric

Value

string consisting of id,"s",sp

Examples

seq <- "MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGR\
GEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQETRN\
MKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQ\
DAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRC\
VDGLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEI\
TLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQ\
HEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAVVAAVMWRRK\
SSDRKGGSYTQAASSDSAQGSDVSLTACKV"
nam <-"sp|P30443|1A01_HUMAN"
sp <- 24
makeID(seq, nam, sp)

protViz/prozor documentation built on Oct. 17, 2023, 6:39 p.m.