addBmatToSnap: Add cell-by-bin matrix

In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq

Add cell-by-bin matrix

Description

This function takes a snap object as input and add the cell-by-bin matrix to the existing snap object.

Usage

addBmatToSnap(obj, bin.size, do.par, num.cores)

Arguments

obj	A snap object to add cell-by-bin matrix.
bin.size	Cell-by-bin matrix with bin size of bin.size will be added to snap object.
do.par	A logical variable indicates whether use multiple processors [FALSE].
num.cores	Number of processors to use [1].

Value

Return a snap object

Examples

file.name = system.file("extdata", "demo.snap", package = "SnapATAC");
demo.sp = createSnap(file.name, sample="demo", do.par=FALSE);
showBinSizes(file.name);
demo.sp = addBmatToSnap(demo.sp, bin.size=100000, do.par=FALSE);

r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.