demo.sp: Single Nucleus ATAC-seq Object
In r3fang/SnapATAC: Single Nucleus Analysis Package for ATAC-Seq
demo.sp R Documentation
Single Nucleus ATAC-seq Object
Description
Data from single nucleus ATAC-seq experiment on secondary motor cortex
in adult mouse brain. The data is down-sampled to 171 cells with 27,348 100kb bins,
999 peaks and 1,000 genes.
Usage
data(demo.sp)
Format
An object of class "snap" with 100 cells:
- metData
meta data of each cell
- bmat
cell x bin matrix
- pmat
cell x peak matrix
- gmat
cell x gene matrix
- jmat
jaccard index matrix object
- graph
knn graph
- cluster
cluster result
- tsne
tsne cooridnates
- umap
umap cooridnates
Examples
data(demo.sp)
r3fang/SnapATAC documentation built on March 29, 2022, 4:33 p.m.
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| demo.sp | R Documentation |
Single Nucleus ATAC-seq Object
Description
Data from single nucleus ATAC-seq experiment on secondary motor cortex in adult mouse brain. The data is down-sampled to 171 cells with 27,348 100kb bins, 999 peaks and 1,000 genes.
Usage
data(demo.sp)
Format
An object of class "snap" with 100 cells:
- metData
meta data of each cell
- bmat
cell x bin matrix
- pmat
cell x peak matrix
- gmat
cell x gene matrix
- jmat
jaccard index matrix object
- graph
knn graph
- cluster
cluster result
- tsne
tsne cooridnates
- umap
umap cooridnates
Examples
data(demo.sp)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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